Sep 20th, 2017
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- This article provides multiple solutions to create an elegant Venn diagram with R or RStudio. The following R packages will be illustrated: ggvenn, ggVenDiagram, VennDiagram and the gplots packages. Contents: Create a demo data Using the ggvenn R package Using the ggVennDiagram R package Using the VennDiagram R package Using the gplots R package Conclusion.
- Various R programming tools for plotting data, including: - calculating and plotting locally smoothed summary function as ('bandplot', 'wapply'), - enhanced versions.
- Install.packages(' gplots ') Citation of original package: Gregory R. Warnes, Ben Bolker, Lodewijk Bonebakker, Robert Gentleman, Wolfgang Huber Andy Liaw, Thomas Lumley, Martin Maechler, Arni Magnusson, Steffen Moeller, Marc Schwartz and Bill Venables (2015). Gplots: Various R Programming Tools for Plotting Data.
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Installing package into ‘C:/Users/parth/Documents/R/win-library/3.1’
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.1/gplots_3.0.1.zip'
Content type 'application/zip' length 511603 bytes (499 Kb)
downloaded 499 Kb
package ‘gplots’ successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:UsersparthAppDataLocalTempRtmpOy2SKWdownloaded_packages
> library(gplots)
Error in readRDS(nsInfoFilePath) : unknown input format
package ‘gplots’ was built under R version 3.1.3
Error: package or namespace load failed for ‘gplots’
> sessionInfo()
Platform: x86_64-w64-mingw32/x64 (64-bit)
locale:
[1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252
[3] LC_MONETARY=English_United States.1252 LC_NUMERIC=C
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] tools_3.1.2
Install Ggplot2 R
'gplots' packages does not work. I had installed de 'gplots' package and then I loaded the library but the package did not work. I recieved a message like this:. Install R Packages. A quick and easy way to install a package in R is with the install.packages function. If you know the package name, then this approach is handy. The Syntax behind this function is: # Function to install package R install.packages('package Name') Step 1: Please replace the package name with your desired package name in R.
[This article was first published on Learning Omics » R, and kindly contributed to R-bloggers]. (You can report issue about the content on this page here) Want to share your content on R-bloggers? click here if you have a blog, or here if you don't.
Have no fear, the screenshots are here! (For the original tutorial, click here)
Part 1-Getting the Package onto Your Computer
Conda Install Gplots
- Open R via your preferred method (icon on desktop, Start Menu, dock, etc.)
- Click “Packages” in the top menu then click “Install package(s)”.
- Choose a mirror that is closest to your geographical location.
- Now you get to choose which packages you want to install. If you would like to install multiple packages, click on each one while holding the CTRL key or the cloverleaf-looking key. For now just highlight “ggplot2″.
- You will know when the package has been downloaded onto your computer when another greater-than symbol (“>”) appears.
Part 2-Loading the Package into R
- Type “library(ggplot2)” and then press the Enter/Return key.
- All done.
You will only need to do Part 1 once time on your computer. From now on, you only need to do Part 2 each time you close and restart R.
Use this method once you get more acquainted with the whole copy and paste business. It is much quicker than Method 1.
Part 1-Getting the Package onto Your Computer
- Type “install.packages(“gplots”)” and then press the Enter/Return key.
- If you have already loaded a package from a server in the R session, then R will automatically install the package. If not, R will automatically prompt you to choose a mirror. Again, choose one close to unless you want to watch a loading bar slowly inch its way to fulfillment.
Part 2-Loading the Package into R
- Type “library(gplots)” and then press the Enter/Return key.
- All done. R will spit out a lot more output because it needs to install other packages required for gplots.
Again, you will only need to do Part 1 one time on your computer. From now on, you only need to do Part 2 each time you close and restart R.
Install Gplots Conda
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Gplots Install Ubuntu
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